Relaxation kinetics of the helix-coil transition of a self-complementary ribo-oligonucleotide: A7U7

Biophys Chem. 1977 Nov;7(3):211-6. doi: 10.1016/0301-4622(77)87024-5.

Abstract

Relaxation measurements on the kinetics of the double helix to coil transition for the self-complementary ribo-oligonucleotide A7U7 are reported over a concentration range of 6.9 micrometer to 19.6 micrometer in single strand in 1 M NaCl. The rate constants for helix formation are about 2 X 10(6) M-1 s-1 and decrease with increasing temperature yielding an activation enthalpy of -6 kcal/mole. The rate constants for helix dissociation range from 3 to 250 s-1 and increase with increasing temperature yielding an activation enthalpy of +45 kcal/mole. The kinetic data reported here for 1 M NaCl is compared with previously published results obtained at lower salt concentrations. These data are discussed in terms of the quantitative effect of ionic strength on the kinetics of helix-coil transitions in oligo- and polynucleotides.

MeSH terms

  • Kinetics
  • Nucleic Acid Conformation
  • Oligonucleotides*
  • Oligoribonucleotides*
  • Poly A-U
  • Thermodynamics

Substances

  • Oligonucleotides
  • Oligoribonucleotides
  • Poly A-U