Human inner ear OCP2 cDNA maps to 5q22-5q35.2 with related sequences on chromosomes 4p16.2-4p14, 5p13-5q22, 7pter-q22, 10 and 12p13-12qter

Gene. 1997 Jan 15;184(2):163-7. doi: 10.1016/s0378-1119(96)00590-2.

Abstract

Mouse Ocp2-rs2 maps to chromosome 11 and encodes an 18.6 kDa peptide abundantly expressed in the organ of Corti. We show that sequences similar to murine Ocp2-rs2 are found on human chromosomes 4p16.2-4p14, 5p13-5q35.2, 7pter-q22, 10 and 12p13-12qter as revealed by Southern blot analyses of human/rodent somatic cell hybrids. A fetal human inner ear cDNA library was screened with a cloned 254 bp PCR product of murine Ocp2-rs2. One of two human cDNA clones (CM1) was sequenced from the 5' end that begins with murine Ocp2-rs2 codon 14 through the stop codon and 258 nucleotides of 3-UTR and was found to have the identical deduced amino acid sequence to Ocp2-rs2. Based on the sequence in the 3'-UTR of CM1, a PCR primer pain was synthesized and used to confirm that a human homologue of Ocp2-rs2, designated OCP2 and expressed in the developing human inner ear, is localized to 5q22-5q35.2. Other OCP2-like sequences located on chromosomes 4p16.2-4p14, 7pter-q22 and 12p13-12qter (but not the chromosome 10 OCP2-like sequence) will PCR amplify the expected size product at a lower annealing temperature using the OCP2 3'-UTR PCR primers indicating that there may be a human OCP2 gene family.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Chromosome Mapping*
  • Chromosomes, Human, Pair 10*
  • Chromosomes, Human, Pair 12*
  • Chromosomes, Human, Pair 4*
  • Chromosomes, Human, Pair 5*
  • Chromosomes, Human, Pair 7*
  • Cricetinae
  • Cricetulus
  • DNA, Complementary
  • Ear, Inner / embryology
  • Ear, Inner / metabolism*
  • Gene Expression
  • Gene Library
  • Humans
  • Hybrid Cells
  • Mice
  • Molecular Sequence Data
  • Polymerase Chain Reaction
  • S-Phase Kinase-Associated Proteins
  • Transcription Factors / chemistry*

Substances

  • DNA, Complementary
  • S-Phase Kinase-Associated Proteins
  • SKP1 protein, human
  • Transcription Factors

Associated data

  • GENBANK/I30987
  • GENBANK/R30699
  • GENBANK/R62234
  • GENBANK/T24594
  • GENBANK/T84600
  • GENBANK/T94674
  • GENBANK/T97535
  • GENBANK/U33760
  • GENBANK/U37558
  • GENBANK/Z35481