Structural analysis of substrate binding by the molecular chaperone DnaK

Science. 1996 Jun 14;272(5268):1606-14. doi: 10.1126/science.272.5268.1606.

Abstract

DnaK and other members of the 70-kilodalton heat-shock protein (hsp70) family promote protein folding, interaction, and translocation, both constitutively and in response to stress, by binding to unfolded polypeptide segments. These proteins have two functional units: a substrate-binding portion binds the polypeptide, and an adenosine triphosphatase portion facilitates substrate exchange. The crystal structure of a peptide complex with the substrate-binding unit of DnaK has now been determined at 2.0 angstroms resolution. The structure consists of a beta-sandwich subdomain followed by alpha-helical segments. The peptide is bound to DnaK in an extended conformation through a channel defined by loops from the beta sandwich. An alpha-helical domain stabilizes the complex, but does not contact the peptide directly. This domain is rotated in the molecules of a second crystal lattice, which suggests a model of conformation-dependent substrate binding that features a latch mechanism for maintaining long lifetime complexes.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Chaperonins / chemistry
  • Chaperonins / metabolism*
  • Crystallography, X-Ray
  • Escherichia coli
  • Escherichia coli Proteins*
  • HSP70 Heat-Shock Proteins / chemistry
  • HSP70 Heat-Shock Proteins / metabolism*
  • Models, Molecular
  • Molecular Sequence Data
  • Peptides / metabolism
  • Protein Binding
  • Protein Conformation
  • Sequence Homology, Amino Acid

Substances

  • Escherichia coli Proteins
  • HSP70 Heat-Shock Proteins
  • Peptides
  • Chaperonins
  • dnaK protein, E coli

Associated data

  • PDB/1DKX
  • PDB/1DKY
  • PDB/1DKZ