Genomics. 1993 Apr;16(1):286-8.

Artificially generated data sets for testing DNA sequence assembly algorithms.

Source

Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, New Mexico 87545.

Abstract

We have developed a set of tools, genfrag, to fragment and optionally mutate a DNA sequence to generate benchmark data sets for testing DNA sequence assembly algorithms. Data parameters can be systematically and independently varied to explore the range of data--and corresponding performance of assembly tools--encountered on large-scale random, or "shot-gun," sequencing projects.

PMID:: 8486376; [PubMed - indexed for MEDLINE]

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Research Support, U.S. Gov't, Non-P.H.S.

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Secondary Source ID

GENBANK/X60189

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