Intron creation and polyadenylation in maize are directed by AU-rich RNA

Genes Dev. 1994 May 1;8(9):1117-30. doi: 10.1101/gad.8.9.1117.

Abstract

Intron recognition in Angiosperms is hypothesized to require AU-rich motifs within introns. In this report we examined the role of AU-rich motifs in pre-mRNA processing. AU-rich segments of maize introns inserted near the single intron of the maize Bronze-2(Bz2) gene result in alternative splicing. Other insertions of AU-rich sequence in the Bz2 cDNA resulted in de novo intron creation using splice junctions at the edges of the AU-rich region. Surprisingly, the five AU-rich inserts that we tested also caused polyadenylation, even though none had been selected for that function in plants. Insertions of GC-rich sequence into Bz2 did not cause either splicing or polyadenylation. We propose that AU-rich motifs are a general signal for RNA processing in maize and that in the absence of a 5' splice site, polyadenylation is the default pathway.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Alternative Splicing
  • Base Composition
  • Base Sequence
  • Genes, Plant
  • Introns*
  • Molecular Sequence Data
  • Oligoribonucleotides / chemistry
  • Oligoribonucleotides / genetics*
  • Oligoribonucleotides / metabolism
  • Plant Proteins / genetics
  • Polymerase Chain Reaction
  • RNA Precursors / chemistry
  • RNA Precursors / genetics
  • RNA Precursors / metabolism*
  • RNA, Messenger / chemistry
  • RNA, Messenger / metabolism*
  • RNA, Plant / chemistry
  • RNA, Plant / genetics
  • RNA, Plant / metabolism*
  • Zea mays / genetics*
  • Zea mays / metabolism

Substances

  • Oligoribonucleotides
  • Plant Proteins
  • RNA Precursors
  • RNA, Messenger
  • RNA, Plant
  • BZ2 protein, Zea mays