Reverse transcriptase and substrate dependence of the RNA hypermutagenesis reaction

Nucleic Acids Res. 1995 Jul 25;23(14):2573-8. doi: 10.1093/nar/23.14.2573.

Abstract

G-->A hypermutation is a remarkable phenomenon resulting from retroviral reverse transcription in the presence of highly biased dNTP concentrations. Of the three reverse transcriptases (RTases) available, those of human immunodeficiency virus type 1 (HIV-1), avian myeloblastosis virus (AMV) and Moloney murine leukemia virus (MoMLV), the HIV-1 enzyme showed the greatest sensitivity to biased [dCTP]/[dTTP] ratios. The HIV-1 RTase was able to discriminate between dUTP, dITP and the four DNA precursors and was insensitive to pH. There was little preference for nucleotide contexts. A few exceptionally modified sequences were found presumably resulting from G-->A hypermutation and multiple strand transfer. This particular predilection of the HIV-1 and, by extrapolation, the lentiviral RTases towards G-->A hypermutation suggests that the phenomenon may have contributed to the remarkably elevated A content of these retroviral genomes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Avian Myeloblastosis Virus / enzymology
  • Avian Myeloblastosis Virus / genetics
  • Base Composition
  • Base Sequence
  • DNA Primers / genetics
  • DNA, Viral / genetics
  • Deoxyribonucleotides / metabolism
  • Genome, Viral
  • HIV Reverse Transcriptase
  • HIV-1 / enzymology
  • HIV-1 / genetics
  • Hydrogen-Ion Concentration
  • Molecular Sequence Data
  • Moloney murine leukemia virus / enzymology
  • Moloney murine leukemia virus / genetics
  • Mutagenesis*
  • Oligoribonucleotides / genetics
  • Oligoribonucleotides / metabolism
  • Point Mutation
  • Polymerase Chain Reaction
  • RNA, Viral / genetics*
  • RNA, Viral / metabolism*
  • RNA-Directed DNA Polymerase / metabolism*
  • Substrate Specificity

Substances

  • DNA Primers
  • DNA, Viral
  • Deoxyribonucleotides
  • Oligoribonucleotides
  • RNA, Viral
  • HIV Reverse Transcriptase
  • RNA-Directed DNA Polymerase