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Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.
Fleischmann RD,
Adams MD,
White O,
Clayton RA,
Kirkness EF,
Kerlavage AR,
Bult CJ,
Tomb JF,
Dougherty BA,
Merrick JM, et al.
Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
An approach for genome analysis based on sequencing and assembly of unselected pieces of DNA from the whole chromosome has been applied to obtain the complete nucleotide sequence (1,830,137 base pairs) of the genome from the bacterium Haemophilus influenzae Rd. This approach eliminates the need for initial mapping efforts and is therefore applicable to the vast array of microbial species for which genome maps are unavailable. The H. influenzae Rd genome sequence (Genome Sequence DataBase accession number L42023) represents the only complete genome sequence from a free-living organism.
PMID: 7542800 [PubMed - indexed for MEDLINE]
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Cited by over 100 PubMed Central articles
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Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.
Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J, Greene JM, Perna NT, Glasner JD, Plunkett G 3rd, et al.
BMC Bioinformatics. 2009 Jun 10; 10:177. Epub 2009 Jun 10.
[BMC Bioinformatics. 2009]
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The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation.
Loevenich SN, Brunner E, King NL, Deutsch EW, Stein SE, FlyBase Consortium, Aebersold R, Hafen E.
BMC Bioinformatics. 2009 Feb 11; 10:59. Epub 2009 Feb 11.
[BMC Bioinformatics. 2009]
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TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach.
Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW.
BMC Bioinformatics. 2009 Feb 11; 10:56. Epub 2009 Feb 11.
[BMC Bioinformatics. 2009]
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