Partial melting of the segment around pseudouridine in yeast 5S RNA

Biochem Biophys Res Commun. 1983 Jul 18;114(1):81-7. doi: 10.1016/0006-291x(83)91596-6.

Abstract

Pseudouridine in yeast 5S RNA was modified with 4-bromomethyl-7-methoxy-coumarin(BMC). Temperature dependence of fluorescence intensity was measured at various concentrations of Mg2+ and K+ cations. Hyperchromicity was also measured. At 100mM KCl and 10mM Mg2+, fluorescence intensity decreased with temperature as free BMC except a plateau at 45 degrees C. Withdrawal of Mg2+ from the buffer resulted in a large quenching at 20 degrees C and showed a gradual increase of fluorescence intensity with temperature, indicating a partial melting of the segment around pseudouridine. The temperature range agrees with the low melting temperature shown by hyperchromicity. In 10 mM KCl solution, the effects are more exaggerated.

MeSH terms

  • Kinetics
  • Magnesium
  • Nucleic Acid Denaturation
  • Potassium
  • Pseudouridine / analysis*
  • RNA, Fungal / isolation & purification*
  • RNA, Ribosomal / isolation & purification*
  • Saccharomyces cerevisiae / analysis*
  • Spectrometry, Fluorescence
  • Umbelliferones
  • Uridine / analogs & derivatives*

Substances

  • RNA, Fungal
  • RNA, Ribosomal
  • Umbelliferones
  • Pseudouridine
  • 4-bromomethyl-7-methoxycoumarin
  • Magnesium
  • Potassium
  • Uridine