Nucleotide-induced ClpC oligomerization and its non-preferential association with ClpP isoforms of pathogenic Leptospira

Int J Biol Macromol. 2024 May;266(Pt 2):131371. doi: 10.1016/j.ijbiomac.2024.131371. Epub 2024 Apr 3.

Abstract

Bacterial caseinolytic protease-chaperone complexes participate in the elimination of misfolded and aggregated protein substrates. The spirochete Leptospira interrogans possess a set of Clp-chaperones (ClpX, ClpA, and ClpC), which may associate functionally with two different isoforms of LinClpP (ClpP1 and ClpP2). The L. interrogans ClpC (LinClpC) belongs to class-I chaperone with two active ATPase domains separated by a middle domain. Using the size exclusion chromatography, ANS dye binding, and dynamic light scattering analysis, the LinClpC is suggested to undergo nucleotide-induced oligomerization. LinClpC associates with either pure LinClpP1 or LinClpP2 isoforms non-preferentially and with equal affinity. Regardless, pure LinClpP isoforms cannot constitute an active protease complex with LinClpC. Interestingly, the heterocomplex LinClpP1P2 in association with LinClpC forms a functional proteolytic machinery and degrade β-casein or FITC-casein in an energy-independent manner. Adding either ATP or ATPγS further fosters the LinClpCP1P2 complex protease activity by nurturing the functional oligomerization of LinClpC. The antibiotic, acyldepsipeptides (ADEP1) display a higher activatory role on LinClpP1P2 protease activity than LinClpC. Altogether, this work illustrates an in-depth study of hetero-tetradecamer LinClpP1P2 association with its cognate ATPase and unveils a new insight into the structural reorganization of LinClpP1P2 in the presence of chaperone, LinClpC to gain protease activity.

Keywords: Acyldepsipeptide; Caseinolytic protease; ClpC ATPase chaperone; Leptospira.

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Bacterial Proteins* / chemistry
  • Bacterial Proteins* / metabolism
  • Endopeptidase Clp / chemistry
  • Endopeptidase Clp / metabolism
  • Heat-Shock Proteins*
  • Leptospira / enzymology
  • Leptospira / metabolism
  • Leptospira interrogans / enzymology
  • Leptospira interrogans / metabolism
  • Molecular Chaperones / chemistry
  • Molecular Chaperones / metabolism
  • Protein Binding
  • Protein Isoforms / chemistry
  • Protein Isoforms / metabolism
  • Protein Multimerization*
  • Proteolysis

Substances

  • Bacterial Proteins
  • Endopeptidase Clp
  • Protein Isoforms
  • ClpC protein, Bacteria
  • Molecular Chaperones
  • Adenosine Triphosphate
  • Heat-Shock Proteins