Pantoea stewartii WceF is a glycan biofilm-modifying enzyme with a bacteriophage tailspike-like fold

J Biol Chem. 2021 Jan-Jun:296:100286. doi: 10.1016/j.jbc.2021.100286. Epub 2021 Jan 13.

Abstract

Pathogenic microorganisms often reside in glycan-based biofilms. Concentration and chain length distribution of these mostly anionic exopolysaccharides (EPS) determine the overall biophysical properties of a biofilm and result in a highly viscous environment. Bacterial communities regulate this biofilm state via intracellular small-molecule signaling to initiate EPS synthesis. Reorganization or degradation of this glycan matrix, however, requires the action of extracellular glycosidases. So far, these were mainly described for bacteriophages that must degrade biofilms for gaining access to host bacteria. The plant pathogen Pantoea stewartii (P. stewartii) encodes the protein WceF within its EPS synthesis cluster. WceF has homologs in various biofilm forming plant pathogens of the Erwinia family. In this work, we show that WceF is a glycosidase active on stewartan, the main P. stewartii EPS biofilm component. WceF has remarkable structural similarity with bacteriophage tailspike proteins (TSPs). Crystal structure analysis showed a native trimer of right-handed parallel β-helices. Despite its similar fold, WceF lacks the high stability found in bacteriophage TSPs. WceF is a stewartan hydrolase and produces oligosaccharides, corresponding to single stewartan repeat units. However, compared with a stewartan-specific glycan hydrolase of bacteriophage origin, WceF showed lectin-like autoagglutination with stewartan, resulting in notably slower EPS cleavage velocities. This emphasizes that the bacterial enzyme WceF has a role in P. stewartii biofilm glycan matrix reorganization clearly different from that of a bacteriophage exopolysaccharide depolymerase.

Keywords: Pantoea stewartii; X-ray crystallography; bacterial pathogenesis; bacteriophage tailspike; biofilm; exopolysaccharide; glycoside hydrolase; oligosaccharide; parallel beta-helix.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Bacteriophages / chemistry
  • Bacteriophages / enzymology
  • Binding Sites
  • Biofilms / growth & development*
  • Carbohydrate Sequence
  • Cloning, Molecular
  • Crystallography, X-Ray
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Genetic Vectors / chemistry
  • Genetic Vectors / metabolism
  • Glycoside Hydrolases / chemistry*
  • Glycoside Hydrolases / genetics
  • Glycoside Hydrolases / metabolism
  • Models, Molecular
  • Oligosaccharides / chemistry
  • Oligosaccharides / metabolism
  • Pantoea / enzymology*
  • Pantoea / genetics
  • Plants / microbiology
  • Polysaccharides, Bacterial / chemistry*
  • Polysaccharides, Bacterial / metabolism
  • Protein Binding
  • Protein Conformation, alpha-Helical
  • Protein Conformation, beta-Strand
  • Protein Interaction Domains and Motifs
  • Protein Multimerization
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Structural Homology, Protein
  • Viral Tail Proteins / chemistry*
  • Viral Tail Proteins / genetics
  • Viral Tail Proteins / metabolism

Substances

  • Bacterial Proteins
  • Oligosaccharides
  • Polysaccharides, Bacterial
  • Recombinant Proteins
  • Viral Tail Proteins
  • stewartan
  • Glycoside Hydrolases
  • tailspike protein, bacteriophage

Supplementary concepts

  • Pantoea stewartii