A novel Foxp3-related immune prognostic signature for glioblastoma multiforme based on immunogenomic profiling

Aging (Albany NY). 2021 Jan 10;13(3):3501-3517. doi: 10.18632/aging.202282. Epub 2021 Jan 10.

Abstract

Foxp3+ regulatory T cells (Treg) play an important part in the glioma immunosuppressive microenvironment. This study analyzed the effect of Foxsp3 on the immune microenvironment and constructed a Foxp3-related immune prognostic signature (IPS)for predicting prognosis in glioblastoma multiforme (GBM). Immunohistochemistry (IHC) staining for Foxp3 was performed in 72 high-grade glioma specimens. RNA-seq data from 152 GBM samples were obtained from The Cancer Genome Atlas database (TCGA) and divided into two groups, Foxp3 High (Foxp3_H) and Foxp3 Low (Foxp3_L), based on Foxp3 expression. We systematically analyzed the influence of Foxp3 on the immune microenvironment. Least Absolute Shrinkage and Selection Operator (LASSO) Cox analysis was conducted for immune-related genes that were differentially expressed between Foxp3_H and Foxp3_L GBM patients. We found a differential expression of Foxp3 in high-grade glioma tissues. The presence of Foxp3 was significantly associated with poor OS. From the four-gene IPS developed, GBM patients were stratified into low-risk and high-risk groups in both the training set and validation sets. Furthermore, we developed a novel nomogram to evaluate the overall survival in GBM patients. This study offers innovative insights into the GBM immune microenvironment and these findings contribute to individualized treatment and improvement in the prognosis for GBM patients.

Keywords: Foxp3; glioblastoma multiforme; immune prognostic signature; nomogram; regulatory T cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Brain Neoplasms / genetics*
  • Brain Neoplasms / immunology
  • Female
  • Forkhead Transcription Factors / genetics*
  • Forkhead Transcription Factors / immunology
  • Gene Expression Profiling
  • Glioblastoma / genetics*
  • Glioblastoma / immunology
  • Humans
  • Male
  • Middle Aged
  • Prognosis
  • RNA-Seq
  • Survival Rate
  • Transcriptome
  • Tumor Microenvironment / genetics*
  • Tumor Microenvironment / immunology

Substances

  • FOXP3 protein, human
  • Forkhead Transcription Factors