Artificial intelligence to predict the BRAFV600E mutation in patients with thyroid cancer

PLoS One. 2020 Nov 25;15(11):e0242806. doi: 10.1371/journal.pone.0242806. eCollection 2020.

Abstract

Purpose: To investigate whether a computer-aided diagnosis (CAD) program developed using the deep learning convolutional neural network (CNN) on neck US images can predict the BRAFV600E mutation in thyroid cancer.

Methods: 469 thyroid cancers in 469 patients were included in this retrospective study. A CAD program recently developed using the deep CNN provided risks of malignancy (0-100%) as well as binary results (cancer or not). Using the CAD program, we calculated the risk of malignancy based on a US image of each thyroid nodule (CAD value). Univariate and multivariate logistic regression analyses were performed including patient demographics, the American College of Radiology (ACR) Thyroid Imaging, Reporting and Data System (TIRADS) categories and risks of malignancy calculated through CAD to identify independent predictive factors for the BRAFV600E mutation in thyroid cancer. The predictive power of the CAD value and final multivariable model for the BRAFV600E mutation in thyroid cancer were measured using the area under the receiver operating characteristic (ROC) curves.

Results: In this study, 380 (81%) patients were positive and 89 (19%) patients were negative for the BRAFV600E mutation. On multivariate analysis, older age (OR = 1.025, p = 0.018), smaller size (OR = 0.963, p = 0.006), and higher CAD value (OR = 1.016, p = 0.004) were significantly associated with the BRAFV600E mutation. The CAD value yielded an AUC of 0.646 (95% CI: 0.576, 0.716) for predicting the BRAFV600E mutation, while the multivariable model yielded an AUC of 0.706 (95% CI: 0.576, 0.716). The multivariable model showed significantly better performance than the CAD value alone (p = 0.004).

Conclusion: Deep learning-based CAD for thyroid US can help us predict the BRAFV600E mutation in thyroid cancer. More multi-center studies with more cases are needed to further validate our study results.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Aged
  • Artificial Intelligence*
  • Carcinoma, Papillary / diagnosis
  • Carcinoma, Papillary / epidemiology
  • Carcinoma, Papillary / genetics*
  • Carcinoma, Papillary / pathology
  • Diagnosis, Computer-Assisted
  • Female
  • Humans
  • Male
  • Middle Aged
  • Mutation / genetics
  • Proto-Oncogene Proteins B-raf / genetics*
  • Thyroid Gland / diagnostic imaging
  • Thyroid Gland / pathology
  • Thyroid Neoplasms / diagnostic imaging
  • Thyroid Neoplasms / epidemiology
  • Thyroid Neoplasms / genetics*
  • Thyroid Neoplasms / pathology
  • Thyroid Nodule
  • Tomography, X-Ray Computed

Substances

  • BRAF protein, human
  • Proto-Oncogene Proteins B-raf

Grants and funding

This study was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) by the Ministry of Education (2016R1D1A1B03930375) and by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (2019R1A2C1002375). ). This study was also supported by a CMB-Yuhan research grant of Yonsei University College of Medicine (6-2017-0170). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.