Pharmacogenomics Biomarker Discovery and Validation for Translation in Clinical Practice

Clin Transl Sci. 2021 Jan;14(1):113-119. doi: 10.1111/cts.12869. Epub 2020 Oct 22.

Abstract

Interindividual variability in drug efficacy and toxicity is a major challenge in clinical practice. Variations in drug pharmacokinetics (PKs) and pharmacodynamics (PDs) can be, in part, explained by polymorphic variants in genes encoding drug metabolizing enzymes and transporters (absorption, distribution, metabolism, and excretion) or in genes encoding drug receptors. Pharmacogenomics (PGx) has allowed the identification of predictive biomarkers of drug PKs and PDs and the current knowledge of genome-disease and genome-drug interactions offers the opportunity to optimize tailored drug therapy. High-throughput PGx genotyping, from targeted to more comprehensive strategies, allows the identification of PK/PD genotypes to be developed as clinical predictive biomarkers. However, a biomarker needs a robust process of validation followed by clinical-grade assay development and must comply to stringent regulatory guidelines. We here discuss the methodological challenges and the emerging technological tools in PGx biomarker discovery and validation, at the crossroad among molecular genetics, bioinformatics, and clinical medicine.

Publication types

  • Review

MeSH terms

  • Biomarkers, Pharmacological / analysis*
  • Computational Biology / methods
  • Computational Biology / trends
  • Drug Interactions / genetics
  • Feasibility Studies
  • Genome-Wide Association Study
  • Genotyping Techniques / instrumentation
  • Genotyping Techniques / methods
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Pharmacogenetics / instrumentation
  • Pharmacogenetics / methods*
  • Pharmacogenetics / trends
  • Pharmacogenomic Testing / instrumentation
  • Pharmacogenomic Testing / methods
  • Pharmacogenomic Testing / trends
  • Pharmacogenomic Variants
  • Translational Research, Biomedical / instrumentation
  • Translational Research, Biomedical / methods*
  • Translational Research, Biomedical / trends
  • Validation Studies as Topic

Substances

  • Biomarkers, Pharmacological