What Determines the Selectivity of Arginine Dihydroxylation by the Nonheme Iron Enzyme OrfP?

Chemistry. 2021 Jan 21;27(5):1795-1809. doi: 10.1002/chem.202004019. Epub 2020 Dec 30.

Abstract

The nonheme iron enzyme OrfP reacts with l-Arg selectively to form the 3R,4R-dihydroxyarginine product, which in mammals can inhibit the nitric oxide synthase enzymes involved in blood pressure control. To understand the mechanisms of dioxygen activation of l-Arg by OrfP and how it enables two sequential oxidation cycles on the same substrate, we performed a density functional theory study on a large active site cluster model. We show that substrate binding and positioning in the active site guides a highly selective reaction through C3 -H hydrogen atom abstraction. This happens despite the fact that the C3 -H and C4 -H bond strengths of l-Arg are very similar. Electronic differences in the two hydrogen atom abstraction pathways drive the reaction with an initial C3 -H activation to a low-energy 5 σ-pathway, while substrate positioning destabilizes the C4 -H abstraction and sends it over the higher-lying 5 π-pathway. We show that substrate and monohydroxylated products are strongly bound in the substrate binding pocket and hence product release is difficult and consequently its lifetime will be long enough to trigger a second oxygenation cycle.

Keywords: density functional theory; enzyme mechanism; enzyme modelling; hydroxylation; nonheme.

MeSH terms

  • Arginine / chemistry*
  • Arginine / metabolism*
  • Catalytic Domain
  • Hydrogen / chemistry
  • Hydrogen / metabolism
  • Hydroxylation
  • Nonheme Iron Proteins / metabolism*
  • Oxidation-Reduction

Substances

  • Nonheme Iron Proteins
  • Hydrogen
  • Arginine