Revisiting the cysteine-rich proteins encoded in the 3'-proximal open reading frame of the positive-sense single-stranded RNA of some monopartite filamentous plant viruses: functional dissection of p15 from grapevine virus B

Arch Virol. 2020 Oct;165(10):2229-2239. doi: 10.1007/s00705-020-04729-w. Epub 2020 Jul 16.

Abstract

A reexamination of proteins with conserved cysteines and basic amino acids encoded by the 3'-proximal gene of the positive-sense single-stranded RNA of some monopartite filamentous plant viruses has been carried out. The cysteines are involved in a putative Zn-finger domain, which, together with the basic amino acids, form part of the nuclear or nucleolar localization signals. An in-depth study of one of these proteins, p15 from grapevine B virus (GVB), has shown: (i) a three-dimensional structure with four α-helices predicted by two independent in silico approaches, (ii) the nucleolus as the main accumulation site by applying confocal laser microscopy to a fusion between p15 and the green fluorescent protein, (iii) the involvement of the basic amino acids and the putative Zn-finger domain, mapping at the N-terminal region of p15, in the nucleolar localization signal, as revealed by the effect of six alanine substitution mutations, (iv) the p15 suppressor function of sense-mediated RNA silencing as revealed by agroinfiltration in a transgenic line of Nicotiana benthamiana, and (v) the enhancer activity of p15 on viral pathogenicity in N. benthamiana when expressed from a potato virus X vector. In addition, we elaborate on an evolutionary scenario for these filamentous viruses, invoking takeover by a common ancestor(s) of viral or host genes coding for those cysteine-rich proteins, followed by divergence, which would also explain why they are encoded in the 3'-proximal gene of the genomic single-stranded viral RNA.

MeSH terms

  • Amino Acid Sequence
  • Cloning, Molecular
  • Evolution, Molecular
  • Flexiviridae / genetics*
  • Flexiviridae / metabolism
  • Gene Expression
  • Models, Molecular
  • Nicotiana / virology
  • Open Reading Frames*
  • Phylogeny
  • Plant Cells / virology
  • Plant Leaves / virology
  • Protein Conformation, alpha-Helical
  • Protein Domains
  • RNA, Viral / genetics*
  • RNA, Viral / metabolism
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Viral Proteins / chemistry
  • Viral Proteins / genetics*
  • Viral Proteins / metabolism

Substances

  • RNA, Viral
  • Recombinant Proteins
  • Viral Proteins

Supplementary concepts

  • Grapevine virus B