A note on the neighbor-joining algorithm of Saitou...[Mol Biol Evol. 1988]

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1: Mol Biol Evol. 1988 Nov;5(6):729-31. Links

A note on the neighbor-joining algorithm of Saitou and Nei.

Department of Microbiology, University of Illinois, Urbana 61801.

PMID: 3221794 [PubMed - indexed for MEDLINE]

A signal-to-noise analysis of phylogeny estimation by neighbor-joining: Insufficiency of polynomial length sequences.
Math Biosci. 2006 Feb; 199(2):188-215. Epub 2006 Jan 18.

[Math Biosci. 2006]
Recrafting the neighbor-joining method.
BMC Bioinformatics. 2006 Jan 19; 7:29. Epub 2006 Jan 19.

[BMC Bioinformatics. 2006]
ReviewNeighbor-joining revealed.
Mol Biol Evol. 2006 Nov; 23(11):1997-2000. Epub 2006 Jul 28.

[Mol Biol Evol. 2006]
Beyond pairwise distances: neighbor-joining with phylogenetic diversity estimates.
Mol Biol Evol. 2006 Mar; 23(3):491-8. Epub 2005 Nov 9.

[Mol Biol Evol. 2006]
ReviewAlgorithms for inferring haplotypes.
Genet Epidemiol. 2004 Dec; 27(4):334-47.

[Genet Epidemiol. 2004]
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FastTree: computing large minimum evolution trees with profiles instead of a distance matrix.
Price MN, Dehal PS, Arkin AP. Mol Biol Evol. 2009 Jul; 26(7):1641-50. Epub 2009 Apr 17.

[Mol Biol Evol. 2009]
ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets.
Lin GN, Cai Z, Lin G, Chakraborty S, Xu D. BMC Bioinformatics. 2009 Jan 30; 10 Suppl 1:S5. Epub 2009 Jan 30.

[BMC Bioinformatics. 2009]
Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.
Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A. PLoS Comput Biol. 2009 Jan; 5(1):e1000267. Epub 2009 Jan 23.

[PLoS Comput Biol. 2009]
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