Structural and functional analysis of an l-serine O-phosphate decarboxylase involved in norcobamide biosynthesis

FEBS Lett. 2019 Nov;593(21):3040-3053. doi: 10.1002/1873-3468.13543. Epub 2019 Jul 30.

Abstract

Structural diversity of natural cobamides (Cbas, B12 vitamers) is limited to the nucleotide loop. The loop is connected to the cobalt-containing corrin ring via an (R)-1-aminopropan-2-ol O-2-phosphate (AP-P) linker moiety. AP-P is produced by the l-threonine O-3-phosphate (l-Thr-P) decarboxylase CobD. Here, the CobD homolog SMUL_1544 of the organohalide-respiring epsilonproteobacterium Sulfurospirillum multivorans was characterized as a decarboxylase that produces ethanolamine O-phosphate (EA-P) from l-serine O-phosphate (l-Ser-P). EA-P is assumed to serve as precursor of the linker moiety of norcobamides that function as cofactors in the respiratory reductive dehalogenase. SMUL_1544 (SmCobD) is a pyridoxal-5'-phosphate (PLP)-containing enzyme. The structural analysis of the SmCobD apoprotein combined with the characterization of truncated mutant proteins uncovered a role of the SmCobD N-terminus in efficient l-Ser-P conversion.

Keywords: cobamides; ethanolamine phosphate; norcobamide biosynthesis; serine phosphate decarboxylase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Campylobacteraceae / chemistry
  • Campylobacteraceae / enzymology*
  • Campylobacteraceae / genetics
  • Carboxy-Lyases / chemistry*
  • Carboxy-Lyases / genetics
  • Carboxy-Lyases / metabolism*
  • Cobamides / biosynthesis
  • Crystallography, X-Ray
  • Ethanolamines / metabolism
  • Models, Molecular
  • Mutation
  • Phosphoserine / metabolism
  • Protein Conformation

Substances

  • Bacterial Proteins
  • Cobamides
  • Ethanolamines
  • Phosphoserine
  • phosphorylethanolamine
  • Carboxy-Lyases

Supplementary concepts

  • Sulfurospirillum multivorans

Associated data

  • GENBANK/WP_052797156.1
  • GENBANK/WP_074605868.1
  • GENBANK/KLE11288.1
  • GENBANK/CQR81539.1
  • GENBANK/GAR68067.1
  • GENBANK/AHJ11577.1