J Biomol Struct Dyn. 1986 Feb;3(4):705-23.

Terminators of transcription with RNA polymerase from Escherichia coli: what they look like and how to find them.

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Department of Polymer Research, Weizmann Institute of Science, Rehovot, Israel.

Abstract

We present here a compilation of prokaryotic transcription terminator sequences (ref. 1-152). The compilation includes 49 independent terminators, 52 speculated independent terminators, 27 sites shown to function in vivo, and some 20 proven or speculated rho-dependent terminators. In addition to the well-known features of independent terminators (dyad symmetry and T-run), two consensus are found: CGGG(C/G) upstream and TCTG downstream of the termination point. A subset of the collection of sequence has been used to construct a computer algorithm to locate independent terminators by sequence analysis.

PMID:: 3078109; [PubMed - indexed for MEDLINE]

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Research Support, Non-U.S. Gov't

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DNA-Directed RNA Polymerases

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Parameters affecting transcription termination by Escherichia coli RNA polymerase. I. Analysis of 13 rho-independent terminators. [J Mol Biol. 1992]
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