The unusual conformation adopted by the adenine tracts in kinetoplast DNA

Cell. 1987 Mar 27;48(6):935-43. doi: 10.1016/0092-8674(87)90702-1.

Abstract

To determine the structural features responsible for the curvature of kinetoplast DNA, we studied 13 adenine tracts in Crithidia fasciculata kinetoplast DNA. The structures of the A tracts were analyzed by cutting the DNA with hydroxyl radical. Reactivity of hydroxyl radical toward the DNA backbone progressively decreased in the 5'----3' direction of each A tract. The cutting pattern of the T-rich strand was offset by 1 or 2 bp from the pattern on the A-rich strand. An A tract in a restriction fragment from plasmid pBR322 had the same cutting pattern as the kinetoplast A tracts. We interpret these experiments to show that in A tracts the width of the minor groove decreases smoothly from the 5'----3' end of the A tract.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenine*
  • Animals
  • Base Sequence
  • Crithidia / genetics
  • DNA, Circular* / isolation & purification
  • DNA, Kinetoplast
  • Hydroxides
  • Hydroxyl Radical
  • Models, Molecular
  • Nucleic Acid Conformation
  • Thermodynamics

Substances

  • DNA, Circular
  • DNA, Kinetoplast
  • Hydroxides
  • Hydroxyl Radical
  • Adenine