CRP-cAMP mediates silencing of Salmonella virulence at the post-transcriptional level

PLoS Genet. 2018 Jun 7;14(6):e1007401. doi: 10.1371/journal.pgen.1007401. eCollection 2018 Jun.

Abstract

Invasion of epithelial cells by Salmonella enterica requires expression of genes located in the pathogenicity island I (SPI-1). The expression of SPI-1 genes is very tightly regulated and activated only under specific conditions. Most studies have focused on the regulatory pathways that induce SPI-1 expression. Here, we describe a new regulatory circuit involving CRP-cAMP, a widely established metabolic regulator, in silencing of SPI-1 genes under non-permissive conditions. In CRP-cAMP-deficient strains we detected a strong upregulation of SPI-1 genes in the mid-logarithmic growth phase. Genetic analyses revealed that CRP-cAMP modulates the level of HilD, the master regulator of Salmonella invasion. This regulation occurs at the post-transcriptional level and requires the presence of a newly identified regulatory motif within the hilD 3'UTR. We further demonstrate that in Salmonella the Hfq-dependent sRNA Spot 42 is under the transcriptional repression of CRP-cAMP and, when this transcriptional repression is relieved, Spot 42 exerts a positive effect on hilD expression. In vivo and in vitro assays indicate that Spot 42 targets, through its unstructured region III, the 3'UTR of the hilD transcript. Together, our results highlight the biological relevance of the hilD 3'UTR as a hub for post-transcriptional control of Salmonella invasion gene expression.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions / genetics
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism
  • Cyclic AMP / genetics
  • Cyclic AMP / metabolism*
  • Cyclic AMP Receptor Protein / genetics
  • Cyclic AMP Receptor Protein / metabolism*
  • Gene Expression Regulation, Bacterial*
  • Genomic Islands / genetics*
  • RNA, Messenger / genetics
  • Salmonella typhimurium / genetics
  • Salmonella typhimurium / pathogenicity*
  • Transcription Factors / genetics*
  • Transcription Factors / metabolism
  • Up-Regulation
  • Virulence / genetics

Substances

  • 3' Untranslated Regions
  • Bacterial Proteins
  • Cyclic AMP Receptor Protein
  • HilD protein, Salmonella typhimurium
  • RNA, Messenger
  • Spi1 protein, Salmonella
  • Transcription Factors
  • Cyclic AMP

Grants and funding

This work was supported by the Spanish Ministry of Economy and Competitiveness (www.mineco.gob.es/) [BIO2010-15417, BIO2013-44220-R, AGL2013-45339-R]; the RecerCaixa program (http://www.acup.cat/es/project/recercaixa) [2012/ACUP/00048] and the Catalonian government (http://agaur.gencat.cat/es/inici/)[2017SGR499]. YEM and TGC were recipient of APIF grant from the University of Barcelona. YEM was recipient of an EMBO STF (http://www.embo.org/) [6903]. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.