Polypharmacological Drug-target Inference for Chemogenomics

Mol Inform. 2018 Sep;37(9-10):e1800050. doi: 10.1002/minf.201800050. Epub 2018 May 24.

Abstract

Pharmacological drug actions are often caused by multi-target effects. While most of the currently approved synthetic drugs were designed to interact with a single 'on-target', these chemical agents often interact with additional 'off-targets'. Understanding and rationalizing these multiple interactions will be indispensable for the design of future precision medicines. We employed computational predictions of drug-target interactions to analyze functional drug-drug relationships. 900 approved drugs were represented in terms of their predicted activity fingerprints, considering 1158 potential target activities. A drug relationship network was constructed based on fingerprint similarity. The resulting network graph highlights clusters of compounds sharing similar predicted on- and off-targets, and allows to identify mutual targets of drugs that were originally developed for different therapeutic indications. Such an analysis offers straightforward access to spotting potential off-target liabilities and drug-drug interactions, as well as drug repurposing opportunities.

Keywords: Chemogenomics; drug design; network; pharmacophore; side effect.

MeSH terms

  • Databases, Chemical
  • Drug Discovery / methods*
  • Drug Interactions
  • Genomics / methods*
  • Humans
  • Molecular Docking Simulation / methods*
  • Quantitative Structure-Activity Relationship*
  • Software*