Characterization of DNA ADP-ribosyltransferase activities of PARP2 and PARP3: new insights into DNA ADP-ribosylation

Nucleic Acids Res. 2018 Mar 16;46(5):2417-2431. doi: 10.1093/nar/gkx1318.

Abstract

Poly(ADP-ribose) polymerases (PARPs) act as DNA break sensors and catalyze the synthesis of polymers of ADP-ribose (PAR) covalently attached to acceptor proteins at DNA damage sites. It has been demonstrated that both mammalian PARP1 and PARP2 PARylate double-strand break termini in DNA oligonucleotide duplexes in vitro. Here, we show that mammalian PARP2 and PARP3 can PARylate and mono(ADP-ribosyl)ate (MARylate), respectively, 5'- and 3'-terminal phosphate residues at double- and single-strand break termini of a DNA molecule containing multiple strand breaks. PARP3-catalyzed DNA MARylation can be considered a new type of reversible post-replicative DNA modification. According to DNA substrate specificity of PARP3 and PARP2, we propose a putative mechanistic model of PARP-catalyzed strand break-oriented ADP-ribosylation of DNA termini. Notably, PARP-mediated DNA ADP-ribosylation can be more effective than PARPs' auto-ADP-ribosylation depending on the DNA substrates and reaction conditions used. Finally, we show an effective PARP3- or PARP2-catalyzed ADP-ribosylation of high-molecular-weight (∼3-kb) DNA molecules, PARP-mediated DNA PARylation in cell-free extracts and a persisting signal of anti-PAR antibodies in a serially purified genomic DNA from bleomycin-treated poly(ADP-ribose) glycohydrolase-depleted HeLa cells. These results suggest that certain types of complex DNA breaks can be effectively ADP-ribosylated by PARPs in cellular response to DNA damage.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Diphosphate Ribose / metabolism
  • Cell Cycle Proteins / metabolism*
  • DNA / chemistry
  • DNA / metabolism*
  • DNA Adducts / metabolism
  • DNA Breaks*
  • DNA Breaks, Double-Stranded
  • HeLa Cells
  • Humans
  • Phosphates / metabolism
  • Poly(ADP-ribose) Polymerases / metabolism*
  • Substrate Specificity

Substances

  • Cell Cycle Proteins
  • DNA Adducts
  • Phosphates
  • Adenosine Diphosphate Ribose
  • DNA
  • PARP3 protein, human
  • Poly(ADP-ribose) Polymerases
  • Parp2 protein, mouse