Moving toward rapid and low-cost point-of-care molecular diagnostics with a repurposed 3D printer and RPA

Anal Biochem. 2018 Mar 15:545:4-12. doi: 10.1016/j.ab.2018.01.008. Epub 2018 Jan 12.

Abstract

Traditionally, the majority of nucleic acid amplification-based molecular diagnostic tests are done in centralized settings. In recent years, point-of-care tests have been developed for use in low-resource settings away from central laboratories. While most experts agree that point-of-care molecular tests are greatly needed, their availability as cost-effective and easy-to-operate tests remains an unmet goal. In this article, we discuss our efforts to develop a recombinase polymerase amplification reaction-based test that will meet these criteria. First, we describe our efforts in repurposing a low-cost 3D printer as a platform that can carry out medium-throughput, rapid, and high-performing nucleic acid extraction. Next, we address how these purified templates can be rapidly amplified and analyzed using the 3D printer's heated bed or the deconstructed, low-cost thermal cycler we have developed. In both approaches, real-time isothermal amplification and detection of template DNA or RNA can be accomplished using a low-cost portable detector or smartphone camera. Last, we demonstrate the capability of our technologies using foodborne pathogens and the Zika virus. Our low-cost approach does not employ complicated and high-cost components, making it suitable for resource-limited settings. When integrated and commercialized, it will offer simple sample-to-answer molecular diagnostics.

Keywords: 3D printers; Foodborne pathogens; Low-resource settings; Nucleic acid extraction; Recombinase polymerase amplification; Zika virus.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • DNA / analysis*
  • DNA / genetics
  • Foodborne Diseases / genetics
  • Foodborne Diseases / microbiology
  • Humans
  • Nucleic Acid Amplification Techniques* / instrumentation
  • Point-of-Care Systems / economics*
  • Polymerase Chain Reaction* / instrumentation
  • Printing, Three-Dimensional* / economics
  • Printing, Three-Dimensional* / instrumentation
  • RNA / analysis*
  • RNA / genetics
  • Recombinases / metabolism*
  • Zika Virus / genetics

Substances

  • Recombinases
  • RNA
  • DNA