An Effective Model of the Retinoic Acid Induced HL-60 Differentiation Program

Sci Rep. 2017 Oct 30;7(1):14327. doi: 10.1038/s41598-017-14523-5.

Abstract

In this study, we present an effective model All-Trans Retinoic Acid (ATRA)-induced differentiation of HL-60 cells. The model describes reinforcing feedback between an ATRA-inducible signalsome complex involving many proteins including Vav1, a guanine nucleotide exchange factor, and the activation of the mitogen activated protein kinase (MAPK) cascade. We decomposed the effective model into three modules; a signal initiation module that sensed and transformed an ATRA signal into program activation signals; a signal integration module that controlled the expression of upstream transcription factors; and a phenotype module which encoded the expression of functional differentiation markers from the ATRA-inducible transcription factors. We identified an ensemble of effective model parameters using measurements taken from ATRA-induced HL-60 cells. Using these parameters, model analysis predicted that MAPK activation was bistable as a function of ATRA exposure. Conformational experiments supported ATRA-induced bistability. Additionally, the model captured intermediate and phenotypic gene expression data. Knockout analysis suggested Gfi-1 and PPARg were critical to the ATRAinduced differentiation program. These findings, combined with other literature evidence, suggested that reinforcing feedback is central to hyperactive signaling in a diversity of cell fate programs.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Cell Cycle Checkpoints*
  • Cell Differentiation
  • Epithelial-Mesenchymal Transition
  • Gene Regulatory Networks / genetics*
  • Granulocyte Precursor Cells / physiology*
  • HL-60 Cells
  • Humans
  • Models, Theoretical*
  • Oxidation-Reduction
  • PPAR gamma / genetics
  • PPAR gamma / metabolism
  • Phenotype
  • Proto-Oncogene Proteins c-vav / metabolism
  • Reactive Oxygen Species / metabolism
  • Signal Transduction
  • Tretinoin / metabolism*

Substances

  • PPAR gamma
  • Proto-Oncogene Proteins c-vav
  • Reactive Oxygen Species
  • VAV1 protein, human
  • Tretinoin