The Streptomyces master regulator BldD binds c-di-GMP sequentially to create a functional BldD2-(c-di-GMP)4 complex

Nucleic Acids Res. 2017 Jun 20;45(11):6923-6933. doi: 10.1093/nar/gkx287.

Abstract

Streptomyces are ubiquitous soil bacteria that undergo a complex developmental transition coinciding with their production of antibiotics. This transition is controlled by binding of a novel tetrameric form of the second messenger, 3΄-5΄ cyclic diguanylic acid (c-di-GMP) to the master repressor, BldD. In all domains of life, nucleotide-based second messengers allow a rapid integration of external and internal signals into regulatory pathways that control cellular responses to changing conditions. c-di-GMP can assume alternative oligomeric states to effect different functions, binding to effector proteins as monomers, intercalated dimers or, uniquely in the case of BldD, as a tetramer. However, at physiological concentrations c-di-GMP is a monomer and little is known about how higher oligomeric complexes assemble on effector proteins and if intermediates in assembly pathways have regulatory significance. Here, we show that c-di-GMP binds BldD using an ordered, sequential mechanism and that BldD function necessitates the assembly of the BldD2-(c-di-GMP)4 complex.

MeSH terms

  • Bacterial Proteins / chemistry*
  • Binding Sites
  • Crystallography, X-Ray
  • Cyclic GMP / analogs & derivatives*
  • Cyclic GMP / chemistry
  • Hydrogen Bonding
  • Models, Molecular
  • Protein Binding
  • Protein Domains
  • Protein Stability
  • Protein Structure, Quaternary
  • Repressor Proteins / chemistry*
  • Streptomyces*

Substances

  • Bacterial Proteins
  • Repressor Proteins
  • bis(3',5')-cyclic diguanylic acid
  • Cyclic GMP