Anaerobic Heme Degradation: ChuY Is an Anaerobilin Reductase That Exhibits Kinetic Cooperativity

Biochemistry. 2017 Feb 14;56(6):845-855. doi: 10.1021/acs.biochem.6b01099. Epub 2017 Jan 26.

Abstract

Heme catabolism is an important biochemical process that many bacterial pathogens utilize to acquire iron. However, tetrapyrrole catabolites can be reactive and often require further processing for transport out of the cell or conversion to another useful cofactor. In previous work, we presented in vitro evidence of an anaerobic heme degradation pathway in Escherichia coli O157:H7. Consistent with reactions that have been reported for other radical S-adenosyl-l-methionine methyltransferases, ChuW transfers a methyl group to heme by a radical-mediated mechanism and catalyzes the β-scission of the porphyrin macrocycle. This facilitates iron release and the production of a new linear tetrapyrrole termed "anaerobilin". In this work, we describe the structure and function of ChuY, an enzyme expressed downstream from chuW within the same heme utilization operon. ChuY is structurally similar to biliverdin reductase and forms a dimeric complex in solution that reduces anaerobilin to the product we have termed anaerorubin. Steady state analysis of ChuY exhibits kinetic cooperativity that is best explained by a random addition mechanism with a kinetically preferred path for initial reduced nicotinamide adenine dinucleotide phosphate binding.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, N.I.H., Extramural

MeSH terms

  • Apoenzymes / chemistry
  • Apoenzymes / genetics
  • Apoenzymes / metabolism
  • Biocatalysis
  • Deuterium
  • Dimerization
  • Escherichia coli O157 / enzymology*
  • Escherichia coli O157 / metabolism
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Heme / metabolism*
  • Hydrolysis
  • Models, Molecular*
  • Molecular Structure
  • Molecular Weight
  • NADP / metabolism
  • Oxidation-Reduction
  • Oxidoreductases Acting on CH-CH Group Donors / chemistry
  • Oxidoreductases Acting on CH-CH Group Donors / genetics
  • Oxidoreductases Acting on CH-CH Group Donors / metabolism*
  • Protein Conformation
  • Protein Interaction Domains and Motifs
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Structural Homology, Protein
  • Substrate Specificity
  • Tetrapyrroles / chemistry
  • Tetrapyrroles / metabolism*

Substances

  • Apoenzymes
  • Escherichia coli Proteins
  • Recombinant Proteins
  • Tetrapyrroles
  • anaerobilin
  • anaerorubin
  • Heme
  • NADP
  • Deuterium
  • ChuY protein, E coli
  • Oxidoreductases Acting on CH-CH Group Donors
  • biliverdin reductase