Harnessing short poly(A)-binding protein-interacting peptides for the suppression of nonsense-mediated mRNA decay

Sci Rep. 2016 Nov 22:6:37311. doi: 10.1038/srep37311.

Abstract

Nonsense-mediated mRNA decay (NMD) is a cellular process that eliminates messenger RNA (mRNA) substrates with premature translation termination codons (PTCs). In addition, NMD regulates the expression of a number of physiological mRNAs, for example transcripts containing long 3' UTRs. Current models implicate the interaction between cytoplasmic poly(A)-binding protein (PABPC1) and translation termination in NMD. Accordingly, PABPC1 present within close proximity of a termination codon antagonizes NMD. Here, we use reporter mRNAs with different NMD-inducing 3' UTRs to establish a general NMD-inhibiting property of PABPC1. NMD-inhibition is not limited to PABPC1, but can also be achieved by peptides consisting of the PABP-interacting motif 2 (PAM2) of different proteins when recruited to an NMD-inhibiting position of NMD reporter transcripts. The short PAM2 peptides efficiently suppress NMD activated by a long 3' UTR, an exon-junction complex (EJC) and individual EJC components, and stabilize a PTC-containing β-globin mRNA. In conclusion, our results establish short PABPC1-recruiting peptides as potent but position-dependent inhibitors of mammalian NMD.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions / genetics
  • Codon, Nonsense / genetics
  • HeLa Cells
  • Humans
  • Nonsense Mediated mRNA Decay / genetics*
  • Peptide Termination Factors / genetics
  • Peptide Termination Factors / metabolism
  • Peptides / genetics*
  • Peptides / metabolism
  • Poly(A)-Binding Protein I / genetics
  • Poly(A)-Binding Protein I / metabolism
  • Poly(A)-Binding Proteins / genetics*
  • Poly(A)-Binding Proteins / metabolism
  • Protein Binding
  • Protein Biosynthesis / genetics
  • RNA Interference
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism
  • beta-Globins / genetics
  • beta-Globins / metabolism

Substances

  • 3' Untranslated Regions
  • Codon, Nonsense
  • Peptide Termination Factors
  • Peptides
  • Poly(A)-Binding Protein I
  • Poly(A)-Binding Proteins
  • RNA, Messenger
  • beta-Globins
  • peptide-chain-release factor 3