DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions

Nature. 2015 Dec 24;528(7583):517-22. doi: 10.1038/nature16193. Epub 2015 Dec 16.

Abstract

T helper 17 (TH17) lymphocytes protect mucosal barriers from infections, but also contribute to multiple chronic inflammatory diseases. Their differentiation is controlled by RORγt, a ligand-regulated nuclear receptor. Here we identify the RNA helicase DEAD-box protein 5 (DDX5) as a RORγt partner that coordinates transcription of selective TH17 genes, and is required for TH17-mediated inflammatory pathologies. Surprisingly, the ability of DDX5 to interact with RORγt and coactivate its targets depends on intrinsic RNA helicase activity and binding of a conserved nuclear long noncoding RNA (lncRNA), Rmrp, which is mutated in patients with cartilage-hair hypoplasia. A targeted Rmrp gene mutation in mice, corresponding to a gene mutation in cartilage-hair hypoplasia patients, altered lncRNA chromatin occupancy, and reduced the DDX5-RORγt interaction and RORγt target gene transcription. Elucidation of the link between Rmrp and the DDX5-RORγt complex reveals a role for RNA helicases and lncRNAs in tissue-specific transcriptional regulation, and provides new opportunities for therapeutic intervention in TH17-dependent diseases.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Retracted Publication

MeSH terms

  • Animals
  • Chromatin / genetics
  • Chromatin / metabolism
  • DEAD-box RNA Helicases / genetics
  • DEAD-box RNA Helicases / metabolism*
  • Female
  • Gene Expression Regulation / genetics
  • Hair / abnormalities
  • Hirschsprung Disease / genetics
  • Humans
  • Immunologic Deficiency Syndromes / genetics
  • Inflammation / immunology
  • Inflammation / pathology
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Mutation / genetics
  • Nuclear Receptor Subfamily 1, Group F, Member 3 / metabolism
  • Organ Specificity
  • Osteochondrodysplasias / congenital
  • Osteochondrodysplasias / genetics
  • Primary Immunodeficiency Diseases
  • Protein Binding
  • RNA, Long Noncoding / genetics
  • RNA, Long Noncoding / metabolism*
  • Th17 Cells / immunology*
  • Th17 Cells / metabolism*
  • Transcription, Genetic / genetics

Substances

  • Chromatin
  • Nuclear Receptor Subfamily 1, Group F, Member 3
  • RNA, Long Noncoding
  • Ddx5 protein, mouse
  • DEAD-box RNA Helicases

Supplementary concepts

  • Cartilage-hair hypoplasia

Associated data

  • GEO/GSE70110