In vitro reconstitution of yeast tUTP/UTP A and UTP B subcomplexes provides new insights into their modular architecture

PLoS One. 2014 Dec 12;9(12):e114898. doi: 10.1371/journal.pone.0114898. eCollection 2014.

Abstract

Eukaryotic ribosome biogenesis is a multistep process involving more than 150 biogenesis factors, which interact transiently with pre-ribosomal particles to promote their maturation. Some of these auxiliary proteins have been isolated in complexes found separate from the ribosomal environment. Among them, are 3 large UTP subcomplexes containing 6 or 7 protein subunits which are involved in the early steps of ribosome biogenesis. The composition of the UTP subcomplexes and the network of binary interactions between protein subunits have been analyzed previously. To obtain further insights into the structural and biochemical properties of UTP subcomplexes, we established a heterologous expression system to allow reconstitution of the yeast tUTP/UTP A and UTP B subcomplexes from their candidate subunits. The results of a series of reconstitution experiments involving different combinations of protein subunits are in good agreement with most of the previously observed binary interactions. Moreover, in combination with additional biochemical analyses, several stable building blocks of the UTP subcomplexes were identified. Based on these findings, we present a refined model of the tUTP/UTP A and UTP B architecture.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Blotting, Western
  • Cells, Cultured
  • In Vitro Techniques
  • Insecta
  • Multiprotein Complexes / genetics
  • Multiprotein Complexes / metabolism*
  • Oligonucleotides
  • Organelle Biogenesis*
  • Ribonucleoproteins / genetics
  • Ribonucleoproteins / metabolism*
  • Ribosomes / metabolism*
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Tandem Mass Spectrometry
  • Uridine Triphosphate / genetics
  • Uridine Triphosphate / metabolism*
  • Yeasts / cytology*
  • Yeasts / metabolism

Substances

  • Multiprotein Complexes
  • Oligonucleotides
  • Ribonucleoproteins
  • Saccharomyces cerevisiae Proteins
  • Uridine Triphosphate

Grants and funding

This work was supported by a grant which was given in the collaborative research center SFB 960 from the “Deutsche Forschungsgemeinschaft” to PM. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.