Aminocella lysinolytica gen. nov., sp. nov., a L-lysine-degrading, strictly anaerobic bacterium in the class Clostridia isolated from a methanogenic reactor of cattle farms

Arch Microbiol. 2015 Jan;197(1):97-104. doi: 10.1007/s00203-014-1066-z. Epub 2014 Dec 2.

Abstract

A strictly anaerobic bacterial strain (WN037(T)) was isolated from a methanogenic reactor. Cells were Gram-positive rods. Strain WN037(T) was asaccharolytic. The strain fermented L-lysine in the presence of B-vitamin mixture or vitamin B12 and produced acetate and butyrate. L-arginine and casamino acids poorly supported the growth. Strain WN037(T) used neither other amino acids nor organic acids examined. The strain had C18:1 ω7c, C16:0 and C18:1 ω7c DMA as the predominant cellular fatty acids. The genomic DNA G + C content was 44.2 mol %. Phylogenetic analysis based on the 16S rRNA gene sequence placed strain WN037(T) in the family Eubacteriaceae in the class Clostridia. The closest relative was Eubacterium pyruvativorans (sequence similarity, 92.8 %). Based on the comprehensive analyses, the novel genus and species, Aminocella lysinolytica gen. nov., sp. nov. was proposed to accommodate the strain. The type strain is WN037(T) (= JCM 19863(T) = DSM 28287(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids / metabolism
  • Animals
  • Bacteria, Anaerobic / classification*
  • Bacteria, Anaerobic / cytology
  • Bacteria, Anaerobic / isolation & purification*
  • Bacteria, Anaerobic / physiology
  • Base Composition
  • Bioreactors*
  • Cattle
  • Culture Media
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Fermentation
  • Genes, rRNA
  • Gram-Positive Bacteria / classification*
  • Gram-Positive Bacteria / cytology
  • Gram-Positive Bacteria / isolation & purification*
  • Gram-Positive Bacteria / physiology
  • Lysine / metabolism*
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA

Substances

  • Amino Acids
  • Culture Media
  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Lysine

Associated data

  • GENBANK/AB298740