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J Chem Theory Comput. 2013 Nov 12;9(11):5116-5126.

Simulation study of the structure and phase behavior of ceramide bilayers and the role of lipid head group chemistry.

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  • 1Department of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, TN, 37235, USA.
  • 2Department of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, TN, 37235, USA ; Department of Chemistry, Vanderbilt University, Nashville, TN, 37235, USA.


Ceramides are known to be a key component of the stratum corneum, the outermost protective layer of the skin that controls barrier function. In this work, molecular dynamics simulations are used to examine the behavior of ceramide bilayers, focusing on non-hydroxy sphingosine (NS) and non-hydroxy phytosphingosine (NP) ceramides. Here, we propose a modified version of the CHARMM force field for ceramide simulation, which is directly compared to the more commonly used GROMOS-based force field of Berger (Biophys. J. 1997, 72); while both force fields are shown to closely match experiment from a structural standpoint at the physiological temperature of skin, the modified CHARMM force field is better able to capture the thermotropic phase transitions observed in experiment. The role of ceramide chemistry and its impact on structural ordering is examined by comparing ceramide NS to NP, using the validated CHARMM-based force field. These simulations demonstrate that changing from ceramide NS to NP results in changes to the orientation of the OH groups in the lipid headgroups. The arrangement of OH groups perpendicular to the bilayer normal for ceramide NP, verse parallel for NS, results in the formation of a distinct hydrogen bonding network, that is ultimately responsible for shifting the gel-to-liquid phase transition to higher temperature, in direct agreement with experiment.


ceramides; force field comparison; head group chemistry; phase transition behavior

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