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PLoS One. 2013 Jun 13;8(6):e65848. doi: 10.1371/journal.pone.0065848. Print 2013.

The EcoData retriever: improving access to existing ecological data.

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  • 1Department of Biology and The Ecology Center, Utah State University, Logan, Utah, United States of America. ben@bendmorris.com

Abstract

Ecological research relies increasingly on the use of previously collected data. Use of existing datasets allows questions to be addressed more quickly, more generally, and at larger scales than would otherwise be possible. As a result of large-scale data collection efforts, and an increasing emphasis on data publication by journals and funding agencies, a large and ever-increasing amount of ecological data is now publicly available via the internet. Most ecological datasets do not adhere to any agreed-upon standards in format, data structure or method of access. Some may be broken up across multiple files, stored in compressed archives, and violate basic principles of data structure. As a result acquiring and utilizing available datasets can be a time consuming and error prone process. The EcoData Retriever is an extensible software framework which automates the tasks of discovering, downloading, and reformatting ecological data files for storage in a local data file or relational database. The automation of these tasks saves significant time for researchers and substantially reduces the likelihood of errors resulting from manual data manipulation and unfamiliarity with the complexities of individual datasets.

PMID:
23785456
[PubMed - indexed for MEDLINE]
PMCID:
PMC3681786
Free PMC Article
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