A guanosine-centric mechanism for RNA chaperone function

Science. 2013 Apr 12;340(6129):190-5. doi: 10.1126/science.1230715. Epub 2013 Mar 7.

Abstract

RNA chaperones are ubiquitous, heterogeneous proteins essential for RNA structural biogenesis and function. We investigated the mechanism of chaperone-mediated RNA folding by following the time-resolved dimerization of the packaging domain of a retroviral RNA at nucleotide resolution. In the absence of the nucleocapsid (NC) chaperone, dimerization proceeded through multiple, slow-folding intermediates. In the presence of NC, dimerization occurred rapidly through a single structural intermediate. The RNA binding domain of heterogeneous nuclear ribonucleoprotein A1 protein, a structurally unrelated chaperone, also accelerated dimerization. Both chaperones interacted primarily with guanosine residues. Replacing guanosine with more weakly pairing inosine yielded an RNA that folded rapidly without a facilitating chaperone. These results show that RNA chaperones can simplify RNA folding landscapes by weakening intramolecular interactions involving guanosine and explain many RNA chaperone activities.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Base Sequence
  • Dimerization
  • Guanosine / chemistry
  • Guanosine / metabolism*
  • Heterogeneous Nuclear Ribonucleoprotein A1
  • Heterogeneous-Nuclear Ribonucleoprotein Group A-B / chemistry
  • Heterogeneous-Nuclear Ribonucleoprotein Group A-B / metabolism
  • Inosine / chemistry
  • Inosine / metabolism
  • Kinetics
  • Models, Molecular
  • Molecular Chaperones / chemistry
  • Molecular Chaperones / metabolism*
  • Moloney murine leukemia virus / genetics
  • Moloney murine leukemia virus / metabolism*
  • Nucleic Acid Conformation
  • Nucleocapsid Proteins / chemistry
  • Nucleocapsid Proteins / metabolism*
  • Protein Binding
  • RNA, Viral / chemistry*
  • RNA, Viral / metabolism

Substances

  • Heterogeneous Nuclear Ribonucleoprotein A1
  • Heterogeneous-Nuclear Ribonucleoprotein Group A-B
  • Molecular Chaperones
  • Nucleocapsid Proteins
  • RNA, Viral
  • Guanosine
  • Inosine