Bioinformatics. 2012 Sep 15;28(18):2388-90. doi: 10.1093/bioinformatics/bts457. Epub 2012 Jul 20.

ANGES: reconstructing ANcestral GEnomeS maps.

Jones BR, Rajaraman A, Tannier E, Chauve C.

Source

Department of Mathematics, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada.

Abstract

SUMMARY:

ANGES is a suite of Python programs that allows reconstructing ancestral genome maps from the comparison of the organization of extant-related genomes. ANGES can reconstruct ancestral genome maps for multichromosomal linear genomes and unichromosomal circular genomes. It implements methods inspired from techniques developed to compute physical maps of extant genomes. Examples of cereal, amniote, yeast or bacteria ancestral genomes are provided, computed with ANGES.

AVAILABILITY:

ANGES is freely available for download at http://paleogenomics.irmacs.sfu.ca/ANGES/. Documentation and examples are available together with the package.

CONTACT:

cedric.chauve@sfu.ca.

PMID:: 22820205; [PubMed - indexed for MEDLINE]

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Research Support, Non-U.S. Gov't

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Saccharomyces Genome Database

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Cited by 1 PubMed Central article

Linearization of ancestral multichromosomal genomes. [BMC Bioinformatics. 2012]
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ANGES: reconstructing ANcestral GEnomeS maps.
ANGES: reconstructing ANcestral GEnomeS maps.
Bioinformatics. 2012 Sep 15 ;28(18):2388-90. doi: 10.1093/bioinformatics/bts457. Epub 2012 Jul 20 .

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