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Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019.

Fiji: an open-source platform for biological-image analysis.

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  • 1Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.

Abstract

Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.

PMID:
22743772
[PubMed - indexed for MEDLINE]
PMCID:
PMC3855844
Free PMC Article
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