The ST Pinch: A side chain-to-side chain hydrogen-bonded motif

Proteins. 2012 May;80(5):1259-63. doi: 10.1002/prot.24045. Epub 2012 Mar 1.

Abstract

The ST Pinch is a 12-membered hydrogen-bonded motif (Ser/Thr-Xaa-Ser/Thr) involving the side chain oxygen atoms of two Ser/Thr residues. We identified the ST Pinch in 104 proteins in a database containing high-resolution crystal structures. Conformational analysis of the ST Pinch in these proteins points to specific preferences for the Xaa residue and a high propensity of this residue to adopt positive φ angles. Our results suggest that this motif serves as a linker of secondary structural elements within proteins and is a new addition to the existing list of short hydrogen bond-stabilized motifs in proteins.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs
  • Amino Acids / chemistry*
  • Databases, Protein
  • Hydrogen Bonding
  • Models, Molecular
  • Peptides / chemistry*
  • Protein Conformation

Substances

  • Amino Acids
  • Peptides