Proton nuclear magnetic resonance assignments and secondary structure determination of the ColE1 rop (rom) protein

Biochemistry. 1990 Aug 14;29(32):7402-7. doi: 10.1021/bi00484a007.

Abstract

The complete resonance assignment of the ColE1 rop (rom) protein at pH 2.3 was obtained by two-dimensional (2D) proton nuclear magnetic resonance spectroscopy (1H NMR) at 500 and 600 MHz using through-bond and through-space connectivities. Sequential assignments and elements of regular secondary structure were deduced by analysis of nuclear Overhauser enhancement spectroscopy (NOESY) experiments and 3JHN alpha coupling constants. One 7.2-kDa monomer of the homodimer consists of two antiparallel helices connected by a hairpin loop at residue 31. The C-terminal peptide consisting of amino acids 59-63 shows no stable conformation. The dimer forms a four-helix bundle with opposite polarization of neighboring elements in agreement with the X-ray structure.

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Colicins*
  • Hydrogen
  • Magnetic Resonance Spectroscopy
  • Molecular Sequence Data
  • Pattern Recognition, Automated
  • Protein Conformation
  • RNA-Binding Proteins*

Substances

  • Bacterial Proteins
  • Colicins
  • RNA-Binding Proteins
  • Rop protein, ColE1 plasmid
  • Hydrogen