Representative time response of background corrected RIF per nucleus in MCF10A exposed to various doses of X-rays and immunostained for 53BP1. (A, B, and C) Maximum intensity projections of representative 3D stack images at various doses (red dots indicate detected 53BP1 RIF) are accompanied with the same nucleus overlaid with the full shape identification of an RIF and the ability of the algorithm to separate touching RIF even at the maximum dose (C—2 Gy, see enlargement). In these images, each RIF is labeled by the algorithm with a different color to facilitate individual visualization. (D) Time response under normal media conditions for one experiment out of seven performed (average R2 across all doses is 0.98 and t test P value is less than 0.01). Experimental data points (circles) get larger with dose (0.1, 0.4, 1, and 2 Gy, respectively), and they correspond to averages for approximately 1,000 nuclei per point, with their corresponding standard deviations. Solid lines are least-square fits using Eq. 1 for each time response. (E) Inhibition of ATM measured by Western blot of P53-S15p. (F) Time response under ATM inhibition (average R2 across all doses is 0.99 and t test P value is less than 0.01), based on one experiment.