F-like T4CPs display C-terminal heterogeneity.
A. The molecular architecture of VirD4 from A. tumefaciens is compared to F-like TraD proteins according to Alvarez-Martinez and Christie (2009). The conserved NTP binding domains are indicated in grey. The TraD C-terminal extension (∼ 200 residues, violet) harbours a variable region of glutamine proline sequential repeats (QQP motif, yellow) and the TraM interaction domain (green).
B. The sequence alignment was performed by using the ClustalW2 multiple sequence alignment program (http://www.ebi.ac.uk/Tools/msa/clustalw2/). Only the last ∼ 200 residues of the aligned T4CPs are shown. T4CPs of plasmid R1 and F, investigated in this study, are highlighted in red. The TraM interaction domain according to Lu et al. (2008) is shown (green box). The T4CP designations include the protein names followed by the plasmid name, according to the GenBank database. Accession numbers for T4CPs are: YP_001096500 for TraD_NR1, NP_052980 for TraD_R100, NP_957631 for TraD_pC15-1a, YP_788090 for TraD_pO86A1, YP_538736 for TraD_pUTI89, YP_313445 for TraD_pSS_046, YP_001294757 for TraD_pSFO157, AAT85682 for TraD_R1, YP_190116 for TraD_pAPEC-02-R, YP_443957 for TraD_pAPEC_02_ColV, YP_001481211 for TraD_pAPEC-01-ColBM, ABG29548 for TraD_pMAR7, BAA97972 for TraD_F, NP_862947 for TraD_p1658/97, NP_490588 for TraD_pSLT, YP_209289 for TraD_pSCV50, NP_073256 for TraD_pKDSC50.