Probing the mechanistic role of the long α-helix in subunit L of respiratory Complex I from Escherichia coli by site-directed mutagenesis

Mol Microbiol. 2011 Dec;82(5):1086-95. doi: 10.1111/j.1365-2958.2011.07883.x. Epub 2011 Nov 7.

Abstract

The C-terminus of the NuoL subunit of Complex I includes a long amphipathic α-helix positioned parallel to the membrane, which has been considered to function as a piston in the proton pumping machinery. Here, we have introduced three types of mutations into the nuoL gene to test the piston-like function. First, NuoL was truncated at its C- and N-termini, which resulted in low production of a fragile Complex I with negligible activity. Second, we mutated three partially conserved residues of the amphipathic α-helix: Asp and Lys residues and a Pro were substituted for acidic, basic or neutral residues. All these variants exhibited almost a wild-type phenotype. Third, several substitutions and insertions were made to reduce rigidity of the amphipathic α-helix, and/or to change its geometry. Most insertions/substitutions resulted in a normal growth phenotype, albeit often with reduced stability of Complex I. In contrast, insertion of six to seven amino acids at a site of the long α-helix between NuoL and M resulted in substantial loss of proton pumping efficiency. The implications of these results for the proton pumping mechanism of Complex I are discussed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Electron Transport Complex I / genetics*
  • Electron Transport Complex I / metabolism*
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics*
  • Escherichia coli Proteins / genetics*
  • Escherichia coli Proteins / metabolism*
  • Models, Biological
  • Models, Molecular
  • Mutagenesis, Insertional
  • Mutagenesis, Site-Directed
  • Mutant Proteins / genetics
  • Mutant Proteins / metabolism
  • NADH Dehydrogenase / genetics*
  • NADH Dehydrogenase / metabolism*
  • Protein Subunits / genetics
  • Protein Subunits / metabolism
  • Sequence Deletion

Substances

  • Escherichia coli Proteins
  • Mutant Proteins
  • Protein Subunits
  • NADH Dehydrogenase
  • NuoL protein, E coli
  • Electron Transport Complex I