(a) Location of CDR loops, displayed on the crystal structure of 2F5 (PDB 1TJG)19. CDRH1 (red), CDRH2 (pink), CDRH3 (cyan), CDR L1 (blue), CDRL2 (orange), CDRL3 (green). The atoms of MPER peptide in the crystal structure are shown as yellow balls. The F100B and I100F amino acids in CDRH3 are shown. The inset shows the same structure with peptides used in deuterium exchange curves shown in panel b. (b) Representative deuterium exchange curves for important regions of 2F5, F100BS and I100FS for protein alone (open circles), protein bound to MPER in solution (solid circles) and protein bound to MPER embedded in liposomes (solid triangles). The residues of each peptide are indicated and their position described in the inset of Panel A. The s.d. of each data point is, at most, ± 0.25 Da. (c) Mass spectra of peptide 100BFGVPIARGPVNAM100N from the CDRH3 after 10 minutes in deuterated buffer. Idealized distributions in the bimodal pattern are indicated by the red (lower mass, more protected) and blue (upper mass, less protected) lines.