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    Results: 16

    1.

    A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria.

    Hoppins S, Collins SR, Cassidy-Stone A, Hummel E, Devay RM, Lackner LL, Westermann B, Schuldiner M, Weissman JS, Nunnari J.

    J Cell Biol. 2011 Oct 17;195(2):323-40. Epub 2011 Oct 10.

    PMID:
    21987634
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Epistatic relationships reveal the functional organization of yeast transcription factors.

    Zheng J, Benschop JJ, Shales M, Kemmeren P, Greenblatt J, Cagney G, Holstege F, Li H, Krogan NJ.

    Mol Syst Biol. 2010 Oct 5;6:420.

    PMID:
    20959818
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Cdc48 and Ufd3, new partners of the ubiquitin protease Ubp3, are required for ribophagy.

    Ossareh-Nazari B, Bonizec M, Cohen M, Dokudovskaya S, Delalande F, Schaeffer C, Van Dorsselaer A, Dargemont C.

    EMBO Rep. 2010 Jul;11(7):548-54. Epub 2010 May 28.

    PMID:
    20508643
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    The genetic landscape of a cell.

    Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Lin ZY, Liang W, Marback M, Paw J, San Luis BJ, Shuteriqi E, Tong AH, van Dyk N, Wallace IM, Whitney JA, Weirauch MT, Zhong G, Zhu H, Houry WA, Brudno M, Ragibizadeh S, Papp B, Pál C, Roth FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris QD, Kim PM, Kaiser CA, Myers CL, Andrews BJ, Boone C.

    Science. 2010 Jan 22;327(5964):425-31.

    PMID:
    20093466
    [PubMed - indexed for MEDLINE]
    Free Article
    5.

    Functional organization of the S. cerevisiae phosphorylation network.

    Fiedler D, Braberg H, Mehta M, Chechik G, Cagney G, Mukherjee P, Silva AC, Shales M, Collins SR, van Wageningen S, Kemmeren P, Holstege FC, Weissman JS, Keogh MC, Koller D, Shokat KM, Krogan NJ.

    Cell. 2009 Mar 6;136(5):952-63.

    PMID:
    19269370
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    High-quality binary protein interaction map of the yeast interactome network.

    Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vazquez A, Murray RR, Simon C, Tardivo L, Tam S, Svrzikapa N, Fan C, de Smet AS, Motyl A, Hudson ME, Park J, Xin X, Cusick ME, Moore T, Boone C, Snyder M, Roth FP, Barabási AL, Tavernier J, Hill DE, Vidal M.

    Science. 2008 Oct 3;322(5898):104-10. Epub 2008 Aug 21.

    PMID:
    18719252
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Reversal of RNA polymerase II ubiquitylation by the ubiquitin protease Ubp3.

    Kvint K, Uhler JP, Taschner MJ, Sigurdsson S, Erdjument-Bromage H, Tempst P, Svejstrup JQ.

    Mol Cell. 2008 May 23;30(4):498-506.

    PMID:
    18498751
    [PubMed - indexed for MEDLINE]
    8.

    Molecular basis for bre5 cofactor recognition by the ubp3 deubiquitylating enzyme.

    Li K, Ossareh-Nazari B, Liu X, Dargemont C, Marmorstein R.

    J Mol Biol. 2007 Sep 7;372(1):194-204. Epub 2007 Jun 27.

    PMID:
    17632125
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    The Bre5/Ubp3 ubiquitin protease complex from budding yeast contributes to the cellular response to DNA damage.

    Bilsland E, Hult M, Bell SD, Sunnerhagen P, Downs JA.

    DNA Repair (Amst). 2007 Oct 1;6(10):1471-84. Epub 2007 Jun 6.

    PMID:
    17556048
    [PubMed - indexed for MEDLINE]
    10.

    Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map.

    Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, Andrews B, Boone C, Berger SL, Hieter P, Zhang Z, Brown GW, Ingles CJ, Emili A, Allis CD, Toczyski DP, Weissman JS, Greenblatt JF, Krogan NJ.

    Nature. 2007 Apr 12;446(7137):806-10. Epub 2007 Feb 21.

    PMID:
    17314980
    [PubMed - indexed for MEDLINE]
    11.

    Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae.

    Collins SR, Kemmeren P, Zhao XC, Greenblatt JF, Spencer F, Holstege FC, Weissman JS, Krogan NJ.

    Mol Cell Proteomics. 2007 Mar;6(3):439-50. Epub 2007 Jan 2.

    PMID:
    17200106
    [PubMed - indexed for MEDLINE]
    Free Article
    12.

    Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.

    Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF.

    Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.

    PMID:
    16554755
    [PubMed - indexed for MEDLINE]
    13.

    Proteome survey reveals modularity of the yeast cell machinery.

    Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dümpelfeld B, Edelmann A, Heurtier MA, Hoffman V, Hoefert C, Klein K, Hudak M, Michon AM, Schelder M, Schirle M, Remor M, Rudi T, Hooper S, Bauer A, Bouwmeester T, Casari G, Drewes G, Neubauer G, Rick JM, Kuster B, Bork P, Russell RB, Superti-Furga G.

    Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.

    PMID:
    16429126
    [PubMed - indexed for MEDLINE]
    14.

    Structural basis for interaction between the Ubp3 deubiquitinating enzyme and its Bre5 cofactor.

    Li K, Zhao K, Ossareh-Nazari B, Da G, Dargemont C, Marmorstein R.

    J Biol Chem. 2005 Aug 12;280(32):29176-85. Epub 2005 Jun 13.

    PMID:
    15955808
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    Ubp3 requires a cofactor, Bre5, to specifically de-ubiquitinate the COPII protein, Sec23.

    Cohen M, Stutz F, Belgareh N, Haguenauer-Tsapis R, Dargemont C.

    Nat Cell Biol. 2003 Jul;5(7):661-7.

    PMID:
    12778054
    [PubMed - indexed for MEDLINE]
    16.

    A comprehensive two-hybrid analysis to explore the yeast protein interactome.

    Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y.

    Proc Natl Acad Sci U S A. 2001 Apr 10;98(8):4569-74. Epub 2001 Mar 13.

    PMID:
    11283351
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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