Bioinformatics. 2011 Sep 1;27(17):2426-8. Epub 2011 Jul 19.

Making whole genome multiple alignments usable for biologists.

Blankenberg D, Taylor J, Nekrutenko A; Galaxy Team.

Collaborators (9)

Afgan E, Baker D, Blankenberg D, Coraor N, Goecks J, Von Kuster G, Lazarus R, Li K, Vincent K.

Source

The Huck Institutes for the Life Sciences and Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA.

Abstract

SUMMARY:

Here we describe a set of tools implemented within the Galaxy platform designed to make analysis of multiple genome alignments truly accessible for biologists. These tools are available through both a web-based graphical user interface and a command-line interface. AVAILABILITY AND IMPLEMENTATION: This open-source toolset was implemented in Python and has been integrated into the online data analysis platform Galaxy (public web access: http://usegalaxy.org; download: http://getgalaxy.org). Additional help is available as a live supplement from http://usegalaxy.org/u/dan/p/maf.

CONTACT:

james.taylor@emory.edu; anton@bx.psu.edu

SUPPLEMENTARY INFORMATION:

Supplementary data are available at Bioinformatics online.

PMID:: 21775304; [PubMed - indexed for MEDLINE]
PMCID:: PMC3157923

Free PMC Article

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Grant Support

HG004909/HG/NHGRI NIH HHS/United States

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