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Bioinformatics. 2011 Aug 1;27(15):2149-50. doi: 10.1093/bioinformatics/btr345. Epub 2011 Jun 7.

nucleR: a package for non-parametric nucleosome positioning.

Author information

  • 1IRB-BSC Joint Research Program on Computational Biology, Institute of Research in Biomedicine, Baldiri i Reixac 10, Barcelona 08028, Spain.

Abstract

SUMMARY:

nucleR is an R/Bioconductor package for a flexible and fast recognition of nucleosome positioning from next generation sequencing and tiling arrays experiments. The software is integrated with standard high-throughput genomics R packages and allows for in situ visualization as well as to export results to common genome browser formats.

AVAILABILITY:

Additional information and methodological details can be found at http://mmb.pcb.ub.es/nucleR

PMID:
21653521
[PubMed - indexed for MEDLINE]
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