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BMC Genomics. 2011 May 24;12:262. doi: 10.1186/1471-2164-12-262.

GiSAO.db: a database for ageing research.

Author information

  • 1Division for Bioinformatics, Biocenter, Innsbruck Medical University, Schöpfstrasse, Austria.

Abstract

BACKGROUND:

Age-related gene expression patterns of Homo sapiens as well as of model organisms such as Mus musculus, Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster are a basis for understanding the genetic mechanisms of ageing. For an effective analysis and interpretation of expression profiles it is necessary to store and manage huge amounts of data in an organized way, so that these data can be accessed and processed easily.

DESCRIPTION:

GiSAO.db (Genes involved in senescence, apoptosis and oxidative stress database) is a web-based database system for storing and retrieving ageing-related experimental data. Expression data of genes and miRNAs, annotation data like gene identifiers and GO terms, orthologs data and data of follow-up experiments are stored in the database. A user-friendly web application provides access to the stored data. KEGG pathways were incorporated and links to external databases augment the information in GiSAO.db. Search functions facilitate retrieval of data which can also be exported for further processing.

CONCLUSIONS:

We have developed a centralized database that is very well suited for the management of data for ageing research. The database can be accessed at https://gisao.genome.tugraz.at and all the stored data can be viewed with a guest account.

PMID:
21609420
[PubMed - indexed for MEDLINE]
PMCID:
PMC3113790
Free PMC Article

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