Proteins regulated by age or altered visual experience. Proteins are again categorized (A–C) associated with the cytoskeleton, (D–F) involved in signal transduction, or (G–I) regulating synaptic efficacy. (J, K) Proteins that do not belong to these categories but are differentially expressed more than 1.25-fold are also shown. Color intensity indicates the level of regulation. Lower expression is indicated in blue, whereas higher expression is indicated in red. The upper panels (A, D, G) show proteins whose expression in visual cortex at P30 is significantly different from that at P46 (left column), whereas expression in dark-reared visual cortex at P46 is not different from that of P46 or P30 visual cortex from normally reared mice. Middle panels (B, E, H) represent proteins different with age, also if dark reared. Lower panels (C, F, I) show those proteins that are not regulated with age, but whose expression in visual cortex from P46 dark-reared mice differs from that in normally reared mice at P30 or P46. The strongly differentially expressed proteins are categorized in a similar fashion, with the left panel (J) showing the age and dark rearing regulated proteins and one age-only regulated protein, and the right panel (K) showing the proteins only affected by dark rearing. * confidence between 85% and 95%. Proteins quantified with less than two peptides in more than one set are indicated in italics and light gray bars. The order of the proteins as shown is determined by hierarchical clustering using average linkage (Multiexperiment viewer, TM4 software).