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Bioinformatics. 2011 Apr 15;27(8):1179-80. doi: 10.1093/bioinformatics/btr095. Epub 2011 Feb 23.

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.

Author information

  • 1Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA.

Abstract

There is a strong and growing need in the biology research community for accurate, automated image analysis. Here, we describe CellProfiler 2.0, which has been engineered to meet the needs of its growing user base. It is more robust and user friendly, with new algorithms and features to facilitate high-throughput work. ImageJ plugins can now be run within a CellProfiler pipeline.

AVAILABILITY AND IMPLEMENTATION:

CellProfiler 2.0 is free and open source, available at http://www.cellprofiler.org under the GPL v. 2 license. It is available as a packaged application for Macintosh OS X and Microsoft Windows and can be compiled for Linux.

CONTACT:

anne@broadinstitute.org

SUPPLEMENTARY INFORMATION:

Supplementary data are available at Bioinformatics online.

PMID:
21349861
[PubMed - indexed for MEDLINE]
PMCID:
PMC3072555
Free PMC Article
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