Biochemical analysis of GFP-Ape4 delivery to vacuole. A, an empty vector (pRS414) was used for transformation of wild-type strain (SEY6210; vector; lanes 1 and 2). Wild-type (WT; SEY6210, lanes 3 and 4), pep4Δ prb1Δ (YMY105; lanes 5 and 6), atg1Δ (WHY1; lanes 7 and 8), atg11Δ (YTS147; lanes 9 and 10), atg19Δ (SSY31; lanes 11 and 12), and ape1Δ (YMY103; lanes 13 and 14) cells were transformed with a plasmid encoding GFP-Ape4 (pTS572). The cells were grown in SC-Trp medium (N+; lanes 1, 3, 5, 7, 9, 11, and 13) and starved in SD(-N) for 3 h (N−, lanes 2, 4, 6, 8, 10, 12, and 14). Protein extracts equivalent to 0.1 A600 nm unit of cells were subjected to SDS-PAGE followed by immunoblot analysis with anti-YFP (upper panel) and anti-Pgk1 (lower panel) antibodies and anti-Ape1 (middle panel) antiserum. B, an empty vector (pRS416) was used for transformation of wild-type strain (SEY6210; vector; lanes 1 and 2). Wild-type (WT; SEY6210; lanes 3 and 4), pep4Δ prb1Δ (YMY105; lanes 5 and 6), atg1Δ (WHY1; lanes 7 and 8), atg11Δ (YTS147; lanes 9 and 10), atg19Δ (SSY31; lanes 11 and 12), and ape1Δ (YMY103; lanes 13 and 14) cells were transformed with a plasmid expressing GFP-Ape4 from the CUP1 promoter (pTS555). The cells were grown and analyzed as described in A. Bands were quantified using ImageJ software, and the percentages of GFP-Ape4 (gray) and GFP (black) were plotted.