Cyclin D1 attenuates AR-dependent gene expression. A, to determine the role of cyclin D1 on AR-dependent gene expression, heat map analysis was performed on selected Pattern I transcripts that are frequently observed as androgen/AR-regulated transcripts. The relative expression of known AR target genes KLK2, KLK4, TMEPAI, AZGP1, and TMPRSS2 (B) and putative AR target genes ABCC4, RAB3B, and HERC3 (C) was performed by SYBR-based qPCR from three or four independent experiments and presented as described in the legend to Fig. 1. Cyclin D1-transduced cells treated with ethanol were included in the validation to assess the impact of cyclin D1 on basal transcription. All transcripts tested were validated as androgen-dependent; however, only the transcripts that demonstrated a significant (p < 0.05) difference in the presence of cyclin D1 are indicated by an asterisk. D, knockdown of cyclin D1, in LNCaP cells cultured under standard growth conditions (i.e. 5% FBS), was performed to further validate the influence of cyclin D1 on AR target gene expression. A representative immunoblot for cyclin D1 knockdown is provided. The relative expression of KLK3/PSA, TMPRSS2, and ABCC4 was determined by qPCR, from three individual experiments, and plotted as described above. E, the transcripts from Pattern I were assessed, bioinformatically, for ARORs within 50 kb of the TSS using a publicly available data set, as described under “Experimental Procedures,” to determine the overall potential of AR to regulate these gene loci.