Bioinformatics. 2011 Feb 1;27(3):431-2. Epub 2010 Dec 12.

Cytoscape 2.8: new features for data integration and network visualization.

Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T.

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Department of Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA. msmoot@ucsd.edu

Abstract

Cytoscape is a popular bioinformatics package for biological network visualization and data integration. Version 2.8 introduces two powerful new features--Custom Node Graphics and Attribute Equations--which can be used jointly to greatly enhance Cytoscape's data integration and visualization capabilities. Custom Node Graphics allow an image to be projected onto a node, including images generated dynamically or at remote locations. Attribute Equations provide Cytoscape with spreadsheet-like functionality in which the value of an attribute is computed dynamically as a function of other attributes and network properties. Availability and implementation: Cytoscape is a desktop Java application released under the Library Gnu Public License (LGPL). Binary install bundles and source code for Cytoscape 2.8 are available for download from http://cytoscape.org.

PMID:: 21149340; [PubMed - indexed for MEDLINE]
PMCID:: PMC3031041

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